# ChangeLog for sci-biology/biopython # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.85 2015/04/07 14:32:18 jlec Exp $ 29 Mar 2015; Justin Lecher -biopython-1.57.ebuild, -biopython-1.64.ebuild, -files/SffIO_broken_padding.patch, -files/SffIO_error_in_check_eof.patch, -files/biopython-1.51-flex.patch, -files/biopython-1.62-SffIO.patch: Drop old 28 Mar 2015; Agostino Sarubbo biopython-1.65.ebuild: Stable for ppc, wrt bug #544544 27 Mar 2015; Agostino Sarubbo biopython-1.65.ebuild: Stable for x86, wrt bug #544544 27 Mar 2015; Agostino Sarubbo biopython-1.65.ebuild: Stable for amd64, wrt bug #544544 26 Mar 2015; Justin Lecher +files/biopython-1.65-test-fix-backport.patch, biopython-1.65.ebuild: Backport test fix 26 Mar 2015; Justin Lecher biopython-1.65.ebuild: Add note for embos support, bug #543510 03 Mar 2015; Justin Lecher -biopython-1.58.ebuild, -biopython-1.59.ebuild, -biopython-1.61.ebuild, -biopython-1.62-r1.ebuild, -biopython-1.62.ebuild, -biopython-1.63-r1.ebuild, -biopython-1.63.ebuild, biopython-1.64.ebuild: Drop old *biopython-1.65 (03 Mar 2015) 03 Mar 2015; Justin Lecher +biopython-1.65.ebuild: Version Bump; add py3 and pypy support *biopython-1.64 (03 Jun 2014) 03 Jun 2014; Justin Lecher +biopython-1.64.ebuild: Version Bump, thanks Martin Mokrejs preparing the ebuild *biopython-1.63-r1 (07 May 2014) 07 May 2014; Justin Lecher +biopython-1.63-r1.ebuild, +files/SffIO_broken_padding.patch, +files/SffIO_error_in_check_eof.patch: Import changes from sci overlay *biopython-1.63 (30 Jan 2014) 30 Jan 2014; Justin Lecher +biopython-1.63.ebuild: Version Bump *biopython-1.62-r1 (29 Dec 2013) 29 Dec 2013; Justin Lecher +biopython-1.62-r1.ebuild, +files/biopython-1.62-SffIO.patch: Add additional patch from Martin Mokrejš *biopython-1.62 (17 Sep 2013) 17 Sep 2013; Justin Lecher +biopython-1.62.ebuild: Version Bump 02 Jul 2013; Justin Lecher biopython-1.61.ebuild: Fix deps for python 06 Jun 2013; Justin Lecher biopython-1.61.ebuild: Keyword ~-linux *biopython-1.61 (26 Apr 2013) 26 Apr 2013; Justin Lecher +biopython-1.61.ebuild, metadata.xml: Version Bump 14 Dec 2012; Ulrich Müller biopython-1.57.ebuild, biopython-1.58.ebuild, biopython-1.59.ebuild: Update LICENSE, HPND according to LICENSE file. *biopython-1.59 (27 Feb 2012) 27 Feb 2012; Andrey Kislyuk +biopython-1.59.ebuild: Version bump 26 Dec 2011; Andrey Kislyuk +biopython-1.58.ebuild: Version bump *biopython-1.58 (26 Dec 2011) 26 Dec 2011; Andrey Kislyuk +biopython-1.58.ebuild: Version bump 23 Jun 2011; Markos Chandras -biopython-1.56.ebuild: Remove old ebuilds. Requested by Arfrever 28 May 2011; Brent Baude biopython-1.57.ebuild: Marking biopython-1.57 ppc for bug 365877 24 May 2011; Markus Meier biopython-1.57.ebuild: x86 stable, bug #365877 06 May 2011; Justin Lecher biopython-1.56.ebuild, biopython-1.57.ebuild: Cleaned DESCRIPTION 05 May 2011; Markos Chandras biopython-1.57.ebuild: Stable on amd64 wrt bug #365877 *biopython-1.57 (03 Apr 2011) 03 Apr 2011; Arfrever Frehtes Taifersar Arahesis +biopython-1.57.ebuild: Version bump. 30 Jan 2011; Arfrever Frehtes Taifersar Arahesis -biopython-1.55.ebuild: Delete. 30 Jan 2011; Raúl Porcel biopython-1.55.ebuild, biopython-1.56.ebuild: Drop alpha/sparc keywords 15 Jan 2011; Pawel Hajdan jr biopython-1.56.ebuild: x86 stable wrt bug #351498 14 Jan 2011; Brent Baude biopython-1.56.ebuild: stable ppc, bug 351498 13 Jan 2011; Markos Chandras biopython-1.56.ebuild: Stable on amd64 wrt bug #351498 06 Jan 2011; Brent Baude biopython-1.55.ebuild: Marking biopython-1.55 ppc for bug 341519 *biopython-1.56 (13 Dec 2010) 13 Dec 2010; Arfrever Frehtes Taifersar Arahesis -biopython-1.53.ebuild, -biopython-1.54.ebuild, +biopython-1.56.ebuild: Version bump. 31 Oct 2010; Raúl Porcel biopython-1.55.ebuild: alpha/sparc stable wrt #341519 21 Oct 2010; Thomas Kahle biopython-1.55.ebuild: x86 stable per bug 341519 19 Oct 2010; Markos Chandras biopython-1.55.ebuild: Stable on amd64 wrt bug #341519 15 Oct 2010; Brent Baude biopython-1.54.ebuild: stable ppc, bug 327151 10 Oct 2010; Raúl Porcel biopython-1.54.ebuild: sparc stable wrt #327151 *biopython-1.55 (17 Sep 2010) 17 Sep 2010; Arfrever Frehtes Taifersar Arahesis +biopython-1.55.ebuild: Version bump. 12 Sep 2010; Tobias Klausmann biopython-1.54.ebuild: Stable on alpha, bug #327151 12 Jul 2010; Christian Faulhammer biopython-1.54.ebuild: stable x86, bug 327151 06 Jul 2010; Markos Chandras biopython-1.54.ebuild: Stable on amd64 wrt bug #327151 *biopython-1.54 (05 Jun 2010) 05 Jun 2010; Arfrever Frehtes Taifersar Arahesis -biopython-1.49.ebuild, -files/biopython-1.49-flex.patch, -biopython-1.51.ebuild, -biopython-1.52.ebuild, +biopython-1.54.ebuild: Version bump. 13 Feb 2010; Raúl Porcel biopython-1.53.ebuild: alpha/sparc stable wrt #301964 07 Feb 2010; Markus Meier biopython-1.53.ebuild: amd64/x86 stable, bug #301964 24 Jan 2010; Brent Baude biopython-1.53.ebuild: stable ppc, bug 301964 *biopython-1.53 (21 Dec 2009) 21 Dec 2009; Arfrever Frehtes Taifersar Arahesis +biopython-1.53.ebuild: Version bump. Set SUPPORT_PYTHON_ABIS. 31 Oct 2009; Markus Meier biopython-1.52.ebuild: amd64/x86 stable, bug #290931 *biopython-1.52 (23 Sep 2009) 23 Sep 2009; Andrey Kislyuk +biopython-1.52.ebuild: Version bump *biopython-1.51 (09 Sep 2009) 09 Sep 2009; Andrey Kislyuk +files/biopython-1.51-flex.patch, +biopython-1.51.ebuild: Version bump 26 Aug 2009; Christian Faulhammer metadata.xml: remove now unused flag description 26 Aug 2009; Christian Faulhammer -biopython-1.42.ebuild, -files/biopython-1.43-buildkdtree.patch, -biopython-1.44.ebuild, -files/biopython-1.44-sequtils-complement.patch, -biopython-1.47.ebuild, -files/biopython-1.47-kdtree.patch: clean up 26 Aug 2009; Tobias Klausmann biopython-1.49.ebuild: Stable on alpha, bug #277822 02 Aug 2009; nixnut biopython-1.49.ebuild: ppc stable #277822 20 Jul 2009; Jeremy Olexa biopython-1.49.ebuild: amd64 stable, bug 277822 17 Jul 2009; Ferris McCormick biopython-1.49.ebuild: Sparc stable --- bug #277822 --- ran tests successfully. 14 Jul 2009; Christian Faulhammer biopython-1.49.ebuild: stable x86, bug 277822 24 Mar 2009; Olivier Fisette metadata.xml: Giving up maintainership of this package. *biopython-1.49 (16 Jan 2009) 16 Jan 2009; Olivier Fisette +files/biopython-1.49-flex.patch, +biopython-1.49.ebuild: Version bump. Thanks to Juan Aguado for his work. Fixes bug #248799. 06 Aug 2008; Ulrich Mueller metadata.xml: Add USE flag description to metadata wrt GLEP 56. 14 Jul 2008; nixnut biopython-1.44.ebuild: Stable on ppc wrt bug 221159 07 Jul 2008; Raúl Porcel biopython-1.44.ebuild: alpha/sparc/x86 stable wrt #221159 *biopython-1.47 (06 Jul 2008) 06 Jul 2008; Olivier Fisette +files/biopython-1.47-kdtree.patch, +biopython-1.47.ebuild: New version. Better documentation installation. Added scripts and test suite. KDTree now enabled by default (requires switching to EAPI 1). 06 Jul 2008; Olivier Fisette biopython-1.44.ebuild: Stable on amd64. 30 Jan 2008; Olivier Fisette biopython-1.42.ebuild, biopython-1.44.ebuild: Q.A.: Quoted variables. 30 Jan 2008; Olivier Fisette -biopython-1.43.ebuild: Removed buggy version (see bug #202602). *biopython-1.44 (30 Jan 2008) 30 Jan 2008; Olivier Fisette +files/biopython-1.44-sequtils-complement.patch, +biopython-1.44.ebuild: Fixed six_frame_translations function. Thanks to JTRiley for his patch. (Fixes bug #202606.) *biopython-1.43 (17 May 2007) 17 May 2007; Olivier Fisette +files/biopython-1.43-buildkdtree.patch, -biopython-1.40b.ebuild, +biopython-1.43.ebuild: New upstream version. Ebuild clean-up. Pruned old version. 16 May 2007; Raúl Porcel biopython-1.42.ebuild: alpha stable wrt #153774 05 Nov 2006; Christian Faulhammer biopython-1.42.ebuild: stabled x86, bug #153774 03 Nov 2006; biopython-1.42.ebuild: stable on amd64 03 Nov 2006; Olivier Fisette -biopython-1.41.ebuild: Pruned old version. 02 Nov 2006; nixnut biopython-1.42.ebuild: Stable on ppc wrt bug 153774 02 Nov 2006; Jason Wever biopython-1.42.ebuild: Stable on SPARC wrt bug #153774. 14 Sep 2006; Olivier Fisette metadata.xml: Taking over maintainership. *biopython-1.42 (12 Sep 2006) 12 Sep 2006; Olivier Fisette +biopython-1.42.ebuild: New upstream version. 19 Jan 2006; George Shapovalov +biopython-1.41.ebuild: new version, cleaned up install 30 Aug 2005; Olivier Fisette -biopython-1.24.ebuild, -biopython-1.30.ebuild: Removed obsolete versions. 12 Jun 2005; Bryan Østergaard biopython-1.40b.ebuild: Stable on alpha. 21 May 2005; Jason Wever biopython-1.40b.ebuild: Stable on SPARC. 13 May 2005; Olivier Fisette -biopython-1.10.ebuild, -biopython-1.21.ebuild, -biopython-1.23.ebuild, biopython-1.40b.ebuild: Removed obsolete versions. Added 1.40b to x86. *biopython-1.40b (19 Feb 2005) 19 Feb 2005; Olivier Fisette +biopython-1.40b.ebuild: New version. Should fix bug #82498. 29 Dec 2004; Ciaran McCreesh : Change encoding to UTF-8 for GLEP 31 compliance *biopython-1.23 (23 Dec 2004) 23 Dec 2004; Olivier Fisette +metadata.xml, +biopython-1.10.ebuild, +biopython-1.21.ebuild, +biopython-1.23.ebuild, +biopython-1.24.ebuild, +biopython-1.30.ebuild: Moved from app-sci/biopython to sci-biology/biopython. 13 Dec 2004; Jason Wever biopython-1.24.ebuild: Stable on sparc. *biopython-1.30 (07 Oct 2004) 07 Oct 2004; George Shapovalvo biopython-1.30.ebuild : new version (#51833) amd64 has problems with KDTree, will try to look into this more later 05 May 2004; Bryan Østergaard biopython-1.24.ebuild: Stable on alpha. 03 Apr 2004; Peter Bienstman biopython-1.24.ebuild: Marked stable on x86 *biopython-1.24 (29 Feb 2004) 29 Feb 2004; Peter Bienstman biopython-1.24.ebuild : version bump *biopython-1.23 (30 Dec 2003) 29 Feb 2004; Peter Bienstman biopython-1.23.ebuild : marked stable on x86 30 Dec 2003; George Shapovalvo biopython-1.23.ebuild : new version, reworked to use distutils. Thanks to Peter Bienstman for an update (#35727) 02 Sep 2003; Alastair Tse biopython-1.10.ebuild, biopython-1.21.ebuild: moved dev-python/Numeric to dev-python/numeric *biopython-1.21 (08 Aug 2003) 08 Aug 2003; George Shapovalov biopython-1.21.ebuild : new version, added few docs (#25428) thanks to Daniel Jaeggi for notification 04 Jul 2003; Alastair Tse biopython-1.10.ebuild: renamed reportlab dep *biopython-1.10 (18 Feb 2003) 18 Feb 2003; George Shapovalov ChangeLog, biopython-1.10.ebuild, files/digest-biopython-1.10 : initial release (#11617) Biopython - python module for Computational Moelcular Biology ebuild submitted by Daniel Jaeggi