ReactionNetwork -- a mutable hash table, stores information about a reaction network
Functions and methods returning an object of class ReactionNetwork :
Methods that use an object of class ReactionNetwork :
- conservationEquations(ReactionNetwork), see conservationEquations -- creates the conservation equations of a reaction network
- conservationEquations(ReactionNetwork,Ring), see conservationEquations -- creates the conservation equations of a reaction network
- conservationEquations(ReactionNetwork,InexactFieldFamily) (missing documentation)
- createConcentrationRates(ReactionNetwork) (missing documentation)
- createInitialValues(ReactionNetwork) (missing documentation)
- createReactionRates(ReactionNetwork) (missing documentation)
- createRing(ReactionNetwork), see createRing -- creates a ring with generators species concentrations, reaction rates, initial values
- createRing(ReactionNetwork,Ring), see createRing -- creates a ring with generators species concentrations, reaction rates, initial values
- createRing(ReactionNetwork,InexactFieldFamily) (missing documentation)
- glue(List,ReactionNetwork), see glue -- combine two networks
- glue(ReactionNetwork,List), see glue -- combine two networks
- glue(ReactionNetwork,ReactionNetwork), see glue -- combine two networks
- negativeLaplacian(ReactionNetwork), see negativeLaplacian -- Computes the negative of the Laplacian matrix of a Reaction Network.
- negativeUndirectedLaplacian(ReactionNetwork), see negativeUndirectedLaplacian -- Computes the negative of the Laplacian matrix of an undirected graph associated with a Reaction Network.
- negativeWeightedLaplacian(ReactionNetwork), see negativeWeightedLaplacian -- Computes the negative of the weighted Laplacian matrix of a Reaction Network.
- net(ReactionNetwork) (missing documentation)
- reactantMatrix(ReactionNetwork), see reactantMatrix -- Computes the reactants matrix of a Reaction Network.
- reactionMatrix(ReactionNetwork) (missing documentation)
- steadyStateEquations(ReactionNetwork), see steadyStateEquations -- creates steady-state equations of a reaction network
- steadyStateEquations(ReactionNetwork,Ring), see steadyStateEquations -- creates steady-state equations of a reaction network
- steadyStateEquations(ReactionNetwork,InexactFieldFamily) (missing documentation)
- stoichiometricConeKer(ReactionNetwork), see stoichiometricConeKer -- Computes a matrix whose columns are the rays of the cone non-negative kernel of the stoichiometric matrix of a Reaction Network.
- stoichiometricMatrix(ReactionNetwork), see stoichiometricMatrix -- Computes the stoichiometric matrix of a Reaction Network.
- stoichiometricSubspace(ReactionNetwork), see stoichiometricSubspace -- Computes the stoichiometric space of a Reaction Network.
- stoichSubspaceKer(ReactionNetwork), see stoichSubspaceKer -- Computes the kernel of the stoichiometric matrix of a Reaction Network.
- subRandomInitVals(ReactionNetwork) (missing documentation)
- subRandomInitVals(ReactionNetwork,Ring) (missing documentation)
- subRandomReactionRates(ReactionNetwork) (missing documentation)
- subRandomReactionRates(ReactionNetwork,Ring) (missing documentation)
- substitute(ReactionNetwork,List) -- substitute species names in reaction network