| dataProcessingPtr() const | pwiz::msdata::SpectrumListWrapper | inlinevirtual |
| defaultChargeMax_ | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
| defaultChargeMin_ | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
| defaultIsolationWidth_ | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
| dp_ | pwiz::msdata::SpectrumListWrapper | protected |
| empty() const | pwiz::msdata::SpectrumListWrapper | inlinevirtual |
| find(const std::string &id) const | pwiz::msdata::SpectrumList | virtual |
| findAbbreviated(const std::string &abbreviatedId, char delimiter='.') const | pwiz::msdata::SpectrumList | virtual |
| findNameValue(const std::string &name, const std::string &value) const | pwiz::msdata::SpectrumList | virtual |
| findSpotID(const std::string &spotID) const | pwiz::msdata::SpectrumList | virtual |
| getMS1RetentionTimes() | pwiz::analysis::SpectrumList_ChargeFromIsotope | |
| getParentIndices(const SpectrumPtr, std::vector< int > &) const | pwiz::analysis::SpectrumList_ChargeFromIsotope | |
| getParentPeaks(const SpectrumPtr, const std::vector< int > &, const double, const double, const double, std::vector< std::vector< double > > &, std::vector< std::vector< double > > &) const | pwiz::analysis::SpectrumList_ChargeFromIsotope | |
| inner() const | pwiz::msdata::SpectrumListWrapper | inline |
| inner_ | pwiz::msdata::SpectrumListWrapper | protected |
| innermost() const | pwiz::msdata::SpectrumListWrapper | inline |
| instantiatePeakPicker(const std::vector< int > &) const | pwiz::analysis::SpectrumList_ChargeFromIsotope | |
| instantiatePeakPicker(const std::vector< int > &, const double, const double, const double) const | pwiz::analysis::SpectrumList_ChargeFromIsotope | |
| massNeutron | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
| maxCharge_ | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
| maxIsotopePeaks | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
| maxNumberPeaks | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
| minCharge_ | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
| minIsotopePeaks | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
| minNumberPeaks | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
| MS1retentionTimes | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
| mzTol | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
| nChainsCheck_ | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
| nSamples | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
| override_ | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
| parentsAfter_ | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
| parentsBefore_ | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
| sigVal_ | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
| simulatedIntensityRankSum | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
| simulatedKLs | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
| simulatedSSEs | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
| simulateKL(const double, const int, const int) | pwiz::analysis::SpectrumList_ChargeFromIsotope | |
| simulateSSE(const int, const int) | pwiz::analysis::SpectrumList_ChargeFromIsotope | |
| simulateTotIntensity(const int) | pwiz::analysis::SpectrumList_ChargeFromIsotope | |
| size() const | pwiz::msdata::SpectrumListWrapper | inlinevirtual |
| spectrum(size_t index, bool getBinaryData=true) const | pwiz::analysis::SpectrumList_ChargeFromIsotope | virtual |
| pwiz::msdata::SpectrumListWrapper::spectrum(size_t index, DetailLevel detailLevel) const | pwiz::msdata::SpectrumListWrapper | inlinevirtual |
| pwiz::msdata::SpectrumList::spectrum(const SpectrumPtr &seed, bool getBinaryData) const | pwiz::msdata::SpectrumList | virtual |
| spectrumIdentity(size_t index) const | pwiz::msdata::SpectrumListWrapper | inlinevirtual |
| SpectrumList_ChargeFromIsotope(const msdata::MSData &msd, int maxCharge=3, int minCharge=1, int parentsBefore=2, int parentsAfter=0, double isolationWindow=1.25, int defaultChargeMax=0, int defaultChargeMin=0) | pwiz::analysis::SpectrumList_ChargeFromIsotope | |
| SpectrumListWrapper(const SpectrumListPtr &inner) | pwiz::msdata::SpectrumListWrapper | inline |
| upperLimitPadding | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
| warn_once(const char *msg) const | pwiz::msdata::SpectrumList | virtual |
| ~SpectrumList() | pwiz::msdata::SpectrumList | inlinevirtual |