Output analysis and diagnostics for MCMC

acf	autocorrelation function for time series
as.mcmc	Markov Chain Monte Carlo Objects
as.mcmc.list	Replicated Markov Chain Monte Carlo Objects
as.ts.mcmc	Coerce mcmc object to time series
autocorr	Autocorrelation function for Markov chains
autocorr.plot	Plot autocorrelations for Markov Chains
codamenu	Main menu driver for the coda package
crosscorr	Cross correlations for MCMC output
crosscorr.plot	Plot image of correlation matrix
densplot	Probability density function estimate from MCMC output
gelman.diag	Gelman and Rubin's diagnostic
gelman.plot	Gelman-Rubin-Brooks plot
geweke.diag	Geweke's convergence diagnostic for Markov chains
geweke.plot	Geweke-Brooks plot
heidel.diag	Heidelberger and Welch's convergence diagnostic
is.mcmc	Markov Chain Monte Carlo Objects
is.mcmc.list	Replicated Markov Chain Monte Carlo Objects
mcmc	Markov Chain Monte Carlo Objects
mcmc.list	Replicated Markov Chain Monte Carlo Objects
multi.menu	Choose multiple options from a menu
plot.mcmc	Summary plots of mcmc objects
raftery.diag	Raftery Lewis diagnostic: Calculate the number of iterations required for an MCMC run
read.and.check	Read data interactively and check that it satisfies conditions
read.bugs	Read BUGS output files
read.bugs.interactive	Read BUGS output files interactively
spec.pgram	Estimate spectral density from smoothed periodogram
summary.mcmc	Summary statistics for Markov Chain Monte Carlo chains
summary.mcmc.list	Summary statistics for Markov Chain Monte Carlo chains
thin	Thinning interval
traceplot	Trace plot of MCMC output
upgrade.mcmc	Upgrade mcmc objects in obsolete format
window.mcmc	Time windows for mcmc objects