Trees | Indices | Help |
---|
|
Bio.SeqIO support for the "uniprot-xml" file format.
See also:
http://www.uniprot.org
The UniProt XML format essentially replaces the old plain text file format originally introduced by SwissProt ("swiss" format in Bio.SeqIO).
|
|||
Parser Parse a UniProt XML entry to a SeqRecord return_raw_comments=True to get back the complete comment field in XML format alphabet=Alphabet.ProteinAlphabet() can be modified if needed, default is protein alphabet. |
|
|||
|
|
|||
NS =
|
|||
REFERENCE_JOURNAL =
|
|||
__package__ =
|
|
Generator Function parses an XML entry at a time from any UniProt XML file returns a SeqRecord for each iteration This generator can be used in Bio.SeqIO return_raw_comments = True --> comment fields are returned as complete xml to allow further processing skip_parsing_errors = True --> if parsing errors are found, skip to next entry |
|
REFERENCE_JOURNAL
|
Trees | Indices | Help |
---|
Generated by Epydoc 3.0.1 on Fri Nov 26 15:43:43 2010 | http://epydoc.sourceforge.net |