Consumer that can receive events from _MASTScanner (DEPRECATED).
A _MASTConsumer parses lines from a mast text output file. The motif
match diagrams are parsed using line buffering. Each of the buffering
functions have a dummy variable that is required for testing using the
Bio.ParserSupport.TaggingConsumer. If this variable isn't there, the
TaggingConsumer barfs. In the _MASTScanner, None is passed in the place
of this variable.
This class is DEPRECATED; please use the read() function in the module
Bio.Motif.Parsers.MAST instead.
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_add_sequence_match_with_diagram(self,
line) |
source code
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