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object --+ | type --+ | RestrictionType --+ | AbstractCut
Implement the methods that are common to all restriction enzymes.
All the methods are classmethod.
For internal use only. Not meant to be instantiate.
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bool |
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bool |
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bool |
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int |
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return a list of all the site of RE in dna. Compensate for circular sequences and so on. dna must be a Bio.Seq.Seq instance or a Bio.Seq.MutableSeq instance. if linear is False, the restriction sites than span over the boundaries will be included. The positions are the first base of the 3' fragment, i.e. the first base after the position the enzyme will cut.
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True if other is an isoschizomer of RE. False else. equischizomer <=> same site, same position of restriction.
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True if other is an isoschizomer of RE. False else. neoschizomer <=> same site, different position of restriction.
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True if other is an isoschizomer of RE. False else. isoschizomer <=> same site.
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return a tuple of all the isoschizomers of RE. if batch is supplied it is used instead of the default AllEnzymes. equischizomer <=> same site, same position of restriction.
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return a tuple of all the neoschizomers of RE. if batch is supplied it is used instead of the default AllEnzymes. neoschizomer <=> same site, different position of restriction.
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return a tuple of all the equischizomers and neoschizomers of RE. if batch is supplied it is used instead of the default AllEnzymes.
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