Module PSEA
source code
Wrappers for PSEA, a program for secondary structure assignment.
See this citation for P-SEA, PMID: 9183534
Labesse G, Colloc'h N, Pothier J, Mornon J-P: P-SEA: a new efficient
assignment of secondary structure from C_alpha. Comput Appl Biosci 1997 ,
13:291-295
ftp://ftp.lmcp.jussieu.fr/pub/sincris/software/protein/p-sea/
|
|
|
|
|
psea2HEC(pseq)
Translate PSEA secondary structure string into HEC. |
source code
|
|
|
annotate(m,
ss_seq)
Apply seconardary structure information to residues in model. |
source code
|
|
Run PSEA and return output filename.
Note that this assumes the P-SEA binary is called "psea" and
that it is on the path.
Note that P-SEA will write an output file in the current directory
using the input filename with extension ".sea".
Note that P-SEA will write output to the terminal while run.
|