Package Bio :: Package UniGene :: Class UnigeneSequenceRecord
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Class UnigeneSequenceRecord

source code

Store the information for one SEQUENCE line from a Unigene file
(DEPRECATED).

Initialize with the text part of the SEQUENCE line, or nothing.

Attributes and descriptions (access as LOWER CASE)
ACC=         GenBank/EMBL/DDBJ accession number of sequence
NID=         Unique nucleotide sequence identifier (gi)
PID=         Unique protein sequence identifier (used for non-ESTs)
CLONE=       Clone identifier (used for ESTs only)
END=         End (5'/3') of clone insert read (used for ESTs only) 
LID=         Library ID; see Hs.lib.info for library name and tissue
MGC=         5' CDS-completeness indicator; if present, 
             the clone associated with this sequence  
             is believed CDS-complete. A value greater than 511
             is the gi of the CDS-complete mRNA matched by the EST,
             otherwise the value is an indicator of the reliability
             of the test indicating CDS comleteness;
             higher values indicate more reliable CDS-completeness predictions. 
SEQTYPE=     Description of the nucleotide sequence. Possible values are
             mRNA, EST and HTC.
TRACE=       The Trace ID of the EST sequence, as provided by NCBI Trace Archive
PERIPHERAL=  Indicator that the sequence is a suboptimal 
             representative of the gene represented by this cluster.
             Peripheral sequences are those that are in a cluster
             which represents a spliced gene without sharing a
             splice junction with any other sequence.  In many
             cases, they are unspliced transcripts originating
             from the gene.

This class is DEPRECATED; please use the read() function in this module
instead.

Instance Methods [hide private]
 
__init__(self, text=None) source code
 
_init_from_text(self, text) source code
 
__repr__(self) source code