Package Bio :: Package Motif :: Package Parsers :: Module MEME :: Class MASTRecord
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Class MASTRecord

source code

The class for holding the results from a MAST run (DEPRECATED).

A MASTRecord holds data about matches between motifs and sequences. The motifs held by the MASTRecord are objects of the class MEMEMotif.

Methods: get_motif_matches_for_sequence(sequence_name): returns all of the motif matches within a given sequence. The matches are objects of the class MEMEInstance get_motif_matches (motif_name): returns all of the matches for a motif in the sequences searched. The matches returned are of class MEMEInstance get_motif_by_name (motif_name): returns a MEMEMotif with the given name.

This class is DEPRECATED; please use the read() function in the module Bio.Motif.Parsers.MAST instead.

Instance Methods [hide private]
 
__init__(self) source code
 
_version(self, version) source code
 
_alphabet(self, alphabet) source code
 
_database(self, database) source code
 
get_motif_matches_for_sequence(self, seq) source code
 
get_motif_matches(self, motif) source code
 
_add_diagram_for_sequence(self, diagram, seq) source code
 
_add_match(self, match) source code
 
_add_sequence(self, sequence) source code
 
_add_motif(self, motif) source code
 
get_motif_by_name(self, name) source code