Module AlignInfo
source code
Extract information from alignment objects.
In order to try and avoid huge alignment objects with tons of
functions, functions which return summary type information about
alignments should be put into classes in this module.
classes: o SummaryInfo o PSSM
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SummaryInfo
Calculate summary info about the alignment.
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PSSM
Represent a position specific score matrix.
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print_info_content(summary_info,
fout=None,
rep_record=0)
Three column output: position, aa in representative sequence,
ic_vector value |
source code
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Protein20Random = 0.05
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Nucleotide4Random = 0.25
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__package__ = ' Bio.Align '
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