Package Bio :: Package GFF :: Module binning
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Module binning

source code

Binning support for Bio.GFF (DEPRECATED)

This is part of the "old" Bio.GFF module by Michael Hoffman, which offered access to a MySQL database holding GFF data loaded by BioPerl. This code has now been deprecated, and will probably be removed in order to free the Bio.GFF namespace for a new GFF parser in Biopython (including GFF3 support).

Classes [hide private]
  Meta
Functions [hide private]
 
query(start=0, stop=Meta.MAX_BIN, minbin=Meta.MIN_BIN, maxbin=Meta.MAX_BIN) source code
 
bin(start, stop, min, wantarray=0) source code
 
bot(tier, pos) source code
 
top(tier, pos) source code
 
name(x, y) source code
 
_test(*args, **keywds) source code