Class UnigeneSequenceRecord
source code
Store the information for one SEQUENCE line from a Unigene file
(DEPRECATED).
Initialize with the text part of the SEQUENCE line, or nothing.
Attributes and descriptions (access as LOWER CASE)
ACC= GenBank/EMBL/DDBJ accession number of sequence
NID= Unique nucleotide sequence identifier (gi)
PID= Unique protein sequence identifier (used for non-ESTs)
CLONE= Clone identifier (used for ESTs only)
END= End (5'/3') of clone insert read (used for ESTs only)
LID= Library ID; see Hs.lib.info for library name and tissue
MGC= 5' CDS-completeness indicator; if present,
the clone associated with this sequence
is believed CDS-complete. A value greater than 511
is the gi of the CDS-complete mRNA matched by the EST,
otherwise the value is an indicator of the reliability
of the test indicating CDS comleteness;
higher values indicate more reliable CDS-completeness predictions.
SEQTYPE= Description of the nucleotide sequence. Possible values are
mRNA, EST and HTC.
TRACE= The Trace ID of the EST sequence, as provided by NCBI Trace Archive
PERIPHERAL= Indicator that the sequence is a suboptimal
representative of the gene represented by this cluster.
Peripheral sequences are those that are in a cluster
which represents a spliced gene without sharing a
splice junction with any other sequence. In many
cases, they are unspliced transcripts originating
from the gene.
This class is DEPRECATED; please use the read() function in this module
instead.